If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 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'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 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=> 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 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'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 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=> 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 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'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 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=> 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 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'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 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=> 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 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'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 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=> 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 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'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 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=> 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 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'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 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=> 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 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'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 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=> 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 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'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 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'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ), 'gf_id' => 'HOM05D000581', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000581' ), 'data_identifier' => 'HOM05D000581', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000581', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '955', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33390' => 'bna', 'A02p05760' => 'bna', 'A03p39780' => 'bna', 'A04p12030' => 'bna', 'A05p33150' => 'bna', 'A06p39930' => 'bna', 'A07p26520' => 'bna', 'A09p04030' => 'bna', 'A10p01970' => 'bna', 'Aa31LG1G9160' => 'aar', 'Aa31LG4G380' => 'aar', 'Aa31LG8G3500' => 'aar', 'Aa31LG8G8190' => 'aar', 'Aa31LG9G16670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2310' => 'aag', 'Actinidia00719' => 'ach', 'Actinidia05735' => 'ach', 'Actinidia08798' => 'ach', 'Actinidia15984' => 'ach', 'Actinidia21715' => 'ach', 'Actinidia23447' => 'ach', 'Actinidia29294' => 'ach', 'Actinidia30287' => 'ach', 'Actinidia30898' => 'ach', 'Actinidia37882' => 'ach', 'Actinidia40207' => 'ach', 'Ah.01g005810' => 'amhyb', 'Ah.10g034880' => 'amhyb', 'Ah.13g074400' => 'amhyb', 'Ah.14g083260' => 'amhyb', 'AL1G12930' => 'aly', 'AL3G29140' => 'aly', 'AL3G35620' => 'aly', 'AL5G19430' => 'aly', 'AL7G51130' => 'aly', 'Aqoxy1G04037' => 'aox', 'Aqoxy2G01327' => 'aox', 'Aqoxy2G03173' => 'aox', 'Aqoxy4G02827' => 'aox', 'Aqoxy4G02855' => 'aox', 'Aqoxy4G03108' => 'aox', 'Aqoxy5G00588' => 'aox', 'Aqoxy7G01416' => 'aox', 'Aqoxy7G01417' => 'aox', 'Aqoxy7G02286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1K8G8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.223T1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E9LMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49YRPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QMN4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RL0S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1YG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87NXW9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCA19C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8563S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM3KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJI0IK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWG320' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R40G9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE8VTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VV9092' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRD574' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8VGS7' => 'arhy', 'AT1G03430' => 'ath', 'AT1G80100' => 'ath', 'AT3G16360' => 'ath', 'AT3G21510' => 'ath', 'AT3G29350' => 'ath', 'AT4G04402' => 'ath', 'AT5G19710' => 'ath', 'AT5G39340' => 'ath', 'ATR0012G044' => 'atr', 'ATR0705G125' => 'atr', 'ATR0820G027' => 'atr', 'ATR1120G166' => 'atr', 'Atru.chr1.1836' => 'acertr', 'Atru.chr1.2688' => 'acertr', 'Atru.chr1.2952' => 'acertr', 'Atru.chr1.3522' => 'acertr', 'Atru.chr12.1026' => 'acertr', 'Atru.chr12.987' => 'acertr', 'Atru.chr2.1859' => 'acertr', 'Atru.chr2.525' => 'acertr', 'Atru.chr4.2715' => 'acertr', 'Atru.chr5.1313' => 'acertr', 'Atru.chr5.1982' => 'acertr', 'Atru.chr7.1455' => 'acertr', 'Atru.chr7.2056' => 'acertr', 'AUR62000847' => 'cqu', 'AUR62009233' => 'cqu', 'AUR62010912' => 'cqu', 'AUR62022204' => 'cqu', 'AUR62031913' => 'cqu', 'AUR62034585' => 'cqu', 'AUR62036684' => 'cqu', 'AUR62040233' => 'cqu', 'AUR62041216' => 'cqu', 'BcaB02g06933' => 'bca', 'BcaB02g07295' => 'bca', 'BcaB04g18613' => 'bca', 'BcaB04g18897' => 'bca', 'BcaB04g19172' => 'bca', 'BcaB04g19509' => 'bca', 'BcaB04g20189' => 'bca', 'BcaB04g20584' => 'bca', 'BcaB05g23032' => 'bca', 'BcaB06g25729' => 'bca', 'BcaB06g26561' => 'bca', 'BcaB06g27291' => 'bca', 'BcaB08g34696' => 'bca', 'BcaC01g03774' => 'bca', 'BcaC01g03823' => 'bca', 'BcaC03g13702' => 'bca', 'BcaC04g23842' => 'bca', 'BcaC05g24530' => 'bca', 'BcaC05g28887' => 'bca', 'BcaC06g30870' => 'bca', 'BcaC06g33689' => 'bca', 'BcaC06g33690' => 'bca', 'BcaC08g45292' => 'bca', 'BcaC09g49088' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02190' => 'bna', 'BolC1t04222H' => 'bol', 'BolC3t17104H' => 'bol', 'BolC4t26151H' => 'bol', 'BolC4t26152H' => 'bol', 'BolC5t28971H' => 'bol', 'BolC5t33762H' => 'bol', 'BolC6t38060H' => 'bol', 'BolC7t44345H' => 'bol', 'BolC9t53356H' => 'bol', 'BraA01t03461Z' => 'bra', 'BraA02t05528Z' => 'bra', 'BraA03t13128Z' => 'bra', 'BraA04t16867Z' => 'bra', 'BraA05t22139Z' => 'bra', 'BraA06t26908Z' => 'bra', 'BraA07t30295Z' => 'bra', 'BraA09t36039Z' => 'bra', 'BraA10t42470Z' => 'bra', 'C01p42660' => 'bna', 'C03p48240' => 'bna', 'C04p45680' => 'bna', 'C05p01910' => 'bna', 'C05p50090' => 'bna', 'C06p28940' => 'bna', 'C07p38230' => 'bna', 'C09p04240' => 'bna', 'CAN.G1143.10' => 'can', 'CAN.G1157.4' => 'can', 'CAN.G1172.9' => 'can', 'CAN.G134.229' => 'can', 'CAN.G1682.6' => 'can', 'CAN.G20.23' => 'can', 'CAN.G309.64' => 'can', 'CAN.G407.82' => 'can', 'CANSAT21G0341' => 'cansat', 'CANSAT25G0742' => 'cansat', 'CANSAT25G3313' => 'cansat', 'CANSAT54G2902' => 'cansat', 'CANSAT56G1027' => 'cansat', 'CANSAT56G1346' => 'cansat', 'CANSAT56G1806' => 'cansat', 'CANSAT78G0698' => 'cansat', 'CARHR002780' => 'chi', 'CARHR074400' => 'chi', 'CARHR091570' => 'chi', 'CARHR097440' => 'chi', 'CARHR154050' => 'chi', 'CARHR193180' => 'chi', 'CARHR193190' => 'chi', 'CARHR263060' => 'chi', 'Carub.0001s0256' => 'cru', 'Carub.0002s2742' => 'cru', 'Carub.0003s1611' => 'cru', 'Carub.0003s2155' => 'cru', 'Carub.0005s0806' => 'cru', 'Carub.0006s1806' => 'cru', 'Carub.0007s3659' => 'cru', 'Ca_01056_v3' => 'car', 'Ca_01164_v3' => 'car', 'Ca_10080_v3' => 'car', 'Ca_10388_v3' => 'car', 'Ca_13452_v3' => 'car', 'Ca_20442_v3' => 'car', 'Ca_23261_v3' => 'car', 'Ca_28291_v3' => 'car', 'CBR_g45775' => 'cbr', 'Cc01_g19940' => 'ccan', 'Cc02_g32420' => 'ccan', 'Cc03_g02630' => 'ccan', 'Cc04_g02570' => 'ccan', 'Cc04_g04370' => 'ccan', 'Cc08_g09890' => 'ccan', 'CDE02G1795' => 'cde', 'CDE06G0806' => 'cde', 'CDE08G0017' => 'cde', 'CDE08G1286' => 'cde', 'Cfa003186' => 'cfa', 'Cfa003649' => 'cfa', 'Cfa003650' => 'cfa', 'Cfa006061' => 'cfa', 'Cfa006524' => 'cfa', 'Cfa010057' => 'cfa', 'Cfa010058' => 'cfa', 'Cfa010060' => 'cfa', 'Cfa015522' => 'cfa', 'Cfa016574' => 'cfa', 'Ciclev10002761m.g' => 'ccl', 'Ciclev10006135m.g' => 'ccl', 'Ciclev10009825m.g' => 'ccl', 'Ciclev10018345m.g' => 'ccl', 'Ciclev10021954m.g' => 'ccl', 'Ciclev10026685m.g' => 'ccl', 'Ciclev10027101m.g' => 'ccl', 'Ciclev10029493m.g' => 'ccl', 'Ciclev10029511m.g' => 'ccl', 'Ciclev10030222m.g' => 'ccl', 'Ciclev10033008m.g' => 'ccl', 'CiPaw.01G155900' => 'cil', 'CiPaw.01G231500' => 'cil', 'CiPaw.01G231600' => 'cil', 'CiPaw.01G248000' => 'cil', 'CiPaw.02G088500' => 'cil', 'CiPaw.02G157200' => 'cil', 'CiPaw.03G225600' => 'cil', 'CiPaw.07G012800' => 'cil', 'CiPaw.07G097700' => 'cil', 'CiPaw.07G202100' => 'cil', 'CiPaw.08G101300' => 'cil', 'CiPaw.08G168000' => 'cil', 'CiPaw.13G138400' => 'cil', 'CiPaw.13G139200' => 'cil', 'CiPaw.14G102400' => 'cil', 'CiPaw.14G114500' => 'cil', 'ClCG00G003330' => 'cla', 'ClCG03G016680' => 'cla', 'ClCG05G005660' => 'cla', 'ClCG06G005570' => 'cla', 'ClCG07G012580' => 'cla', 'ClCG07G013310' => 'cla', 'ClCG08G012100' => 'cla', 'ClCG09G000190' => 'cla', 'COL.COLO4_04302' => 'col', 'COL.COLO4_04303' => 'col', 'COL.COLO4_09157' => 'col', 'COL.COLO4_11951' => 'col', 'COL.COLO4_13557' => 'col', 'COL.COLO4_19941' => 'col', 'COL.COLO4_20997' => 'col', 'COL.COLO4_27209' => 'col', 'COL.COLO4_27219' => 'col', 'COL.COLO4_29784' => 'col', 'COL.COLO4_30511' => 'col', 'COL.COLO4_34753' => 'col', 'Cpa.g.c32929' => 'cpa', 'Cpa.g.c36846' => 'cpa', 'Cpa.g.sc10.265' => 'cpa', 'Cpa.g.sc16.84' => 'cpa', 'Cpa.g.sc168.1' => 'cpa', 'Cpa.g.sc32.127' => 'cpa', 'Cpa.g.sc434.2' => 'cpa', 'Cpa.g.sc5.53' => 'cpa', 'Cpa.g.sc728.2' => 'cpa', 'Cpa.g.sc84.120' => 'cpa', 'Cre01.g040450' => 'cre', 'CsaV3_1G039330' => 'csa', 'CsaV3_2G030700' => 'csa', 'CsaV3_3G014010' => 'csa', 'CsaV3_3G023600' => 'csa', 'CsaV3_4G001620' => 'csa', 'CsaV3_6G005590' => 'csa', 'CsaV3_7G035290' => 'csa', 'CSS0000579' => 'camsi', 'CSS0005690' => 'camsi', 'CSS0009481' => 'camsi', 'CSS0026132' => 'camsi', 'CSS0031946' => 'camsi', 'CSS0034339' => 'camsi', 'CSS0037717' => 'camsi', 'CSS0043734' => 'camsi', 'CSS0047019' => 'camsi', 'CSS0047346' => 'camsi', 'DCAR_002772' => 'dca', 'DCAR_004461' => 'dca', 'DCAR_005829' => 'dca', 'DCAR_007045' => 'dca', 'DCAR_016262' => 'dca', 'DCAR_021343' => 'dca', 'DCAR_023279' => 'dca', 'DCAR_023533' => 'dca', 'DCAR_026351' => 'dca', 'DCAR_027122' => 'dca', 'DCAR_027123' => 'dca', 'DCAR_027124' => 'dca', 'DCAR_027676' => 'dca', 'DCAR_028440' => 'dca', 'Dinv06783' => 'din', 'Dinv11276' => 'din', 'Dinv22921' => 'din', 'Dinv23390' => 'din', 'Dinv24103' => 'din', 'Dinv27922' => 'din', 'Dinv29449' => 'din', 'Dinv31661' => 'din', 'Dinv32975' => 'din', 'Dinv38343' => 'din', 'Dinv40236' => 'din', 'Dinv44450' => 'din', 'Duzib093G1459' => 'dzi', 'Duzib128G0312' => 'dzi', 'Duzib128G2008' => 'dzi', 'Duzib133G1252' => 'dzi', 'Duzib150G1534' => 'dzi', 'Duzib151G0330' => 'dzi', 'Duzib160G0067' => 'dzi', 'Duzib168G0687' => 'dzi', 'Duzib168G1845' => 'dzi', 'Duzib170G0821' => 'dzi', 'Duzib170G0963' => 'dzi', 'Duzib177G0416' => 'dzi', 'Duzib187G0513' => 'dzi', 'Duzib192G0123' => 'dzi', 'Duzib192G0371' => 'dzi', 'Duzib211G0635' => 'dzi', 'Duzib212G0159' => 'dzi', 'Duzib235G0208' => 'dzi', 'Duzib235G0680' => 'dzi', 'ECA232G2591' => 'eca', 'ECA232G3843' => 'eca', 'ECA233G4457' => 'eca', 'ECA240G2377' => 'eca', 'ECA247G2450' => 'eca', 'EL10Ac2g03981' => 'bvu', 'EL10Ac4g09288' => 'bvu', 'EL10Ac5g11060' => 'bvu', 'EL10Ac7g17176' => 'bvu', 'EL10Ac9g21207' => 'bvu', 'EL10Ac9g21208' => 'bvu', 'EL10Ac9g21904' => 'bvu', 'Eucgr.B01218' => 'egr', 'Eucgr.C03731' => 'egr', 'Eucgr.F03077' => 'egr', 'Eucgr.F03875' => 'egr', 'Eucgr.H01607' => 'egr', 'Eucgr.H03655' => 'egr', 'Eucgr.H03656' => 'egr', 'Eucgr.H03657' => 'egr', 'Eucgr.H03658' => 'egr', 'Eucgr.H04435' => 'egr', 'Eucgr.L02263' => 'egr', 'FAN02G3497' => 'fan', 'FAN02G3998' => 'fan', 'FAN05G4004' => 'fan', 'FAN05G4728' => 'fan', 'FAN05G5280' => 'fan', 'FAN07G2395' => 'fan', 'FAN09G2213' => 'fan', 'FAN09G3412' => 'fan', 'FAN11G2727' => 'fan', 'FAN12G2071' => 'fan', 'FAN12G3718' => 'fan', 'FAN14G1435' => 'fan', 'FAN14G3696' => 'fan', 'FAN14G4214' => 'fan', 'FAN15G3064' => 'fan', 'FAN15G3075' => 'fan', 'FAN17G2675' => 'fan', 'FAN19G1961' => 'fan', 'FAN20G0433' => 'fan', 'FAN20G2157' => 'fan', 'FAN21G2884' => 'fan', 'FAN22G0885' => 'fan', 'FAN23G1499' => 'fan', 'FAN24G2706' => 'fan', 'FAN25G0213' => 'fan', 'FAN25G3268' => 'fan', 'FAN26G2331' => 'fan', 'FAN26G3261' => 'fan', 'FAN27G0340' => 'fan', 'FAN27G0656' => 'fan', 'FvH4_1g06050' => 'fve', 'FvH4_2g24320' => 'fve', 'FvH4_2g35290' => 'fve', 'FvH4_3g01870' => 'fve', 'FvH4_3g33681' => 'fve', 'FvH4_4g16820' => 'fve', 'FvH4_6g04970' => 'fve', 'FvH4_6g29740' => 'fve', 'FvH4_6g32380' => 'fve', 'Glyma.01G008300' => 'gma', 'Glyma.02G150800' => 'gma', 'Glyma.03G148600' => 'gma', 'Glyma.03G241700' => 'gma', 'Glyma.06G088100' => 'gma', 'Glyma.07G015600' => 'gma', 'Glyma.07G030100' => 'gma', 'Glyma.07G253100' => 'gma', 'Glyma.08G201100' => 'gma', 'Glyma.08G212800' => 'gma', 'Glyma.10G023200' => 'gma', 'Glyma.10G157800' => 'gma', 'Glyma.11G187300' => 'gma', 'Glyma.13G212800' => 'gma', 'Glyma.13G317900' => 'gma', 'Glyma.13G354700' => 'gma', 'Glyma.15G007400' => 'gma', 'Glyma.15G019500' => 'gma', 'Glyma.15G099800' => 'gma', 'Glyma.16G078000' => 'gma', 'Glyma.19G151900' => 'gma', 'Glyma.19G239100' => 'gma', 'Glyma.20G230800' => 'gma', 'Gohir.A02G135300' => 'ghi', 'Gohir.A05G045500' => 'ghi', 'Gohir.A05G129200' => 'ghi', 'Gohir.A06G091600' => 'ghi', 'Gohir.A06G176400' => 'ghi', 'Gohir.A06G176500' => 'ghi', 'Gohir.A06G176600' => 'ghi', 'Gohir.A06G185700' => 'ghi', 'Gohir.A07G193200' => 'ghi', 'Gohir.A09G085300' => 'ghi', 'Gohir.A09G138100' => 'ghi', 'Gohir.A09G232600' => 'ghi', 'Gohir.A10G065400' => 'ghi', 'Gohir.A10G104700' => 'ghi', 'Gohir.A11G119100' => 'ghi', 'Gohir.A11G260800' => 'ghi', 'Gohir.A12G007300' => 'ghi', 'Gohir.A13G172600' => 'ghi', 'Gohir.A13G223000' => 'ghi', 'Gohir.D05G047200' => 'ghi', 'Gohir.D05G133900' => 'ghi', 'Gohir.D06G090900' => 'ghi', 'Gohir.D06G119600' => 'ghi', 'Gohir.D06G185950' => 'ghi', 'Gohir.D06G192300' => 'ghi', 'Gohir.D09G085300' => 'ghi', 'Gohir.D09G136500' => 'ghi', 'Gohir.D09G233700' => 'ghi', 'Gohir.D10G066900' => 'ghi', 'Gohir.D10G164000' => 'ghi', 'Gohir.D11G124000' => 'ghi', 'Gohir.D11G271200' => 'ghi', 'Gohir.D12G006700' => 'ghi', 'Gohir.D13G178400' => 'ghi', 'Gohir.D13G228000' => 'ghi', 'Gorai.006G101300' => 'gra', 'Gorai.006G156600' => 'gra', 'Gorai.006G256600' => 'gra', 'Gorai.007G132900' => 'gra', 'Gorai.007G291700' => 'gra', 'Gorai.008G006900' => 'gra', 'Gorai.009G048500' => 'gra', 'Gorai.009G087000' => 'gra', 'Gorai.009G137400' => 'gra', 'Gorai.010G104900' => 'gra', 'Gorai.010G137400' => 'gra', 'Gorai.010G218100' => 'gra', 'Gorai.010G218200' => 'gra', 'Gorai.010G225500' => 'gra', 'Gorai.011G071100' => 'gra', 'Gorai.011G182900' => 'gra', 'Gorai.013G203600' => 'gra', 'Gorai.013G258500' => 'gra', 'GSVIVG01011043001' => 'vvi', 'GSVIVG01015307001' => 'vvi', 'GSVIVG01016986001' => 'vvi', 'GSVIVG01017338001' => 'vvi', 'GSVIVG01017840001' => 'vvi', 'GSVIVG01022018001' => 'vvi', 'GSVIVG01034756001' => 'vvi', 'GSVIVG01035294001' => 'vvi', 'HanXRQChr01g0004351' => 'han', 'HanXRQChr02g0033391' => 'han', 'HanXRQChr02g0058621' => 'han', 'HanXRQChr04g0112931' => 'han', 'HanXRQChr07g0191371' => 'han', 'HanXRQChr09g0276221' => 'han', 'HanXRQChr11g0321011' => 'han', 'HanXRQChr14g0451711' => 'han', 'Haze_01027' => 'cav', 'Haze_03349' => 'cav', 'Haze_04262' => 'cav', 'Haze_04790' => 'cav', 'Haze_07034' => 'cav', 'Haze_09258' => 'cav', 'Haze_09390' => 'cav', 'Haze_15846' => 'cav', 'Haze_16556' => 'cav', 'Haze_19570' => 'cav', 'Haze_19799' => 'cav', 'Haze_21918' => 'cav', 'Haze_23420' => 'cav', 'Haze_23427' => 'cav', 'Haze_25820' => 'cav', 'Haze_25823' => 'cav', 'Haze_25824' => 'cav', 'Hma1.2p1_0012F.1_g007340' => 'hma', 'Hma1.2p1_0209F.1_g089310' => 'hma', 'Hma1.2p1_0274F.1_g110410' => 'hma', 'Hma1.2p1_0430F.1_g151400' => 'hma', 'Hma1.2p1_0643F.1_g194570' => 'hma', 'Hma1.2p1_1144F.1_g261270' => 'hma', 'Hma1.2p1_1651F.1_g295730' => 'hma', 'HPP92_000040' => 'vpl', 'HPP92_003275' => 'vpl', 'HPP92_003555' => 'vpl', 'HPP92_006347' => 'vpl', 'HPP92_009858' => 'vpl', 'Hund00518' => 'sun', 'Hund00725' => 'sun', 'Hund03381' => 'sun', 'Hund05516' => 'sun', 'Hund07026' => 'sun', 'Hund07599' => 'sun', 'Hund09107' => 'sun', 'Hund20619' => 'sun', 'Hund21673' => 'sun', 'Lalb_Chr01g0012371' => 'lal', 'Lalb_Chr02g0142971' => 'lal', 'Lalb_Chr02g0148471' => 'lal', 'Lalb_Chr03g0039141' => 'lal', 'Lalb_Chr06g0163241' => 'lal', 'Lalb_Chr06g0167851' => 'lal', 'Lalb_Chr08g0242941' => 'lal', 'Lalb_Chr10g0092891' => 'lal', 'Lalb_Chr10g0092901' => 'lal', 'Lalb_Chr10g0093251' => 'lal', 'Lalb_Chr18g0055851' => 'lal', 'Lalb_Chr20g0118241' => 'lal', 'Lalb_Chr24g0395251' => 'lal', 'Lalb_Chr24g0395481' => 'lal', 'Lalb_Chr24g0396161' => 'lal', 'Lalb_Chr25g0280161' => 'lal', 'Lj1g0010404' => 'lja', 'Lj2A30G108' => 'lonja', 'Lj2g0016110' => 'lja', 'Lj2g0027097' => 'lja', 'Lj3A807T52' => 'lonja', 'Lj3g0000297' => 'lja', 'Lj3g0013246' => 'lja', 'Lj3g0019320' => 'lja', 'Lj3g0020760' => 'lja', 'Lj3g0026832' => 'lja', 'Lj4A714T41' => 'lonja', 'Lj5g0007928' => 'lja', 'Lj5g0011604' => 'lja', 'Lj5P72T12' => 'lonja', 'Lj6C666T4' => 'lonja', 'Lj7A485T32' => 'lonja', 'Lj9A678T39' => 'lonja', 'Lj9P512T51' => 'lonja', 'LjContig00564g0016108' => 'lja', 'Lsat_1_v5_gn_0_13221' => 'lsa', 'Lsat_1_v5_gn_1_33260' => 'lsa', 'Lsat_1_v5_gn_1_4101' => 'lsa', 'Lsat_1_v5_gn_4_97481' => 'lsa', 'Lsat_1_v5_gn_6_7920' => 'lsa', 'Lsat_1_v5_gn_9_44680' => 'lsa', 'Manes.01G212000' => 'mes', 'Manes.03G189000' => 'mes', 'Manes.04G112850' => 'mes', 'Manes.04G134100' => 'mes', 'Manes.05G071000' => 'mes', 'Manes.07G089000' => 'mes', 'Manes.08G023500' => 'mes', 'Manes.09G059100' => 'mes', 'Manes.09G161800' => 'mes', 'Manes.11G033800' => 'mes', 'Manes.11G056700' => 'mes', 'Manes.11G159500' => 'mes', 'Manes.14G162500' => 'mes', 'Manes.15G019500' => 'mes', 'Manes.16G073700' => 'mes', 'Mapoly0030s0142' => 'mpo', 'Mapoly0091s0072' => 'mpo', 'MBI01_g10134_MAGBIO' => 'mbi', 'MBI01_g46121_MAGBIO' => 'mbi', 'MBI04_g20304_MAGBIO' => 'mbi', 'MBI05_g45366_MAGBIO' => 'mbi', 'MBI12_g18251_MAGBIO' => 'mbi', 'MBI12_g47208_MAGBIO' => 'mbi', 'MBI17_g16875_MAGBIO' => 'mbi', 'MBI18_g16959_MAGBIO' => 'mbi', 'MBI18_g35069_MAGBIO' => 'mbi', 'MCO14G545' => 'mco', 'MD02G1065100' => 'mdo', 'MD03G1272900' => 'mdo', 'MD04G1212100' => 'mdo', 'MD08G1111300' => 'mdo', 'MD09G1203100' => 'mdo', 'MD11G1160500' => 'mdo', 'MD11G1293900' => 'mdo', 'MD12G1046900' => 'mdo', 'MD12G1226800' => 'mdo', 'MD13G1176300' => 'mdo', 'MD14G1019100' => 'mdo', 'MD15G1090700' => 'mdo', 'MD15G1195900' => 'mdo', 'MD16G1178100' => 'mdo', 'MD17G1211900' => 'mdo', 'Medtr1g082290' => 'mtr', 'Medtr1g089130' => 'mtr', 'Medtr2g020770' => 'mtr', 'Medtr2g100880' => 'mtr', 'Medtr2g100900' => 'mtr', 'Medtr2g103870' => 'mtr', 'Medtr4g010160' => 'mtr', 'Medtr7g114020' => 'mtr', 'MELO3C006593.2' => 'cme', 'MELO3C015359.2' => 'cme', 'MELO3C017877.2' => 'cme', 'MELO3C021379.2' => 'cme', 'MELO3C024439.2' => 'cme', 'MELO3C030319.2' => 'cme', 'MELO3C030799.2' => 'cme', 'MELO3C031579.2' => 'cme', 'Migut.A00186' => 'egut', 'Migut.F00899' => 'egut', 'Migut.G00235' => 'egut', 'Migut.I00766' => 'egut', 'Migut.I00899' => 'egut', 'Migut.N02131' => 'egut', 'MSTRG.11029' => 'ama', 'MSTRG.12581' => 'ama', 'MSTRG.17429' => 'ama', 'MSTRG.21825' => 'ama', 'MSTRG.24770' => 'ama', 'MSTRG.25916' => 'ama', 'MSTRG.3966' => 'ama', 'MSTRG.4751' => 'ama', 'Nitab4.5_0000059g0300' => 'nta', 'Nitab4.5_0000239g0110' => 'nta', 'Nitab4.5_0000245g0270' => 'nta', 'Nitab4.5_0000664g0130' => 'nta', 'Nitab4.5_0001107g0010' => 'nta', 'Nitab4.5_0001949g0030' => 'nta', 'Nitab4.5_0001949g0040' => 'nta', 'Nitab4.5_0002093g0110' => 'nta', 'Nitab4.5_0003058g0010' => 'nta', 'Nitab4.5_0003070g0040' => 'nta', 'Nitab4.5_0003463g0130' => 'nta', 'Nitab4.5_0005546g0010' => 'nta', 'Nitab4.5_0006816g0020' => 'nta', 'Nitab4.5_0008107g0010' => 'nta', 'Nitab4.5_0008124g0050' => 'nta', 'Nitab4.5_0012634g0010' => 'nta', 'Nn2g12079' => 'nnu', 'Nn2g14652' => 'nnu', 'Nn3g21209' => 'nnu', 'Nn6g35321' => 'nnu', 'Nn8g39077' => 'nnu', 'Nn8g39498' => 'nnu', 'Oeu008304.1' => 'oeu', 'Oeu023603.1' => 'oeu', 'Oeu026782.1' => 'oeu', 'Oeu026783.1' => 'oeu', 'Oeu026784.1' => 'oeu', 'Oeu042086.1' => 'oeu', 'Oeu042092.1' => 'oeu', 'Oeu044805.1' => 'oeu', 'Oeu061788.1' => 'oeu', 'Os01g0743800' => 'osa', 'Os05g0186100' => 'osa', 'Os08g0557700' => 'osa', 'Os09g0567400' => 'osa', 'Peaxi162Scf00006g03911' => 'pax', 'Peaxi162Scf00095g00213' => 'pax', 'Peaxi162Scf00173g01210' => 'pax', 'Peaxi162Scf00204g00022' => 'pax', 'Peaxi162Scf00247g00048' => 'pax', 'Peaxi162Scf00332g00621' => 'pax', 'Peaxi162Scf00434g00728' => 'pax', 'Peaxi162Scf00665g00325' => 'pax', 'Peaxi162Scf00699g10015' => 'pax', 'Peaxi162Scf01039g00232' => 'pax', 'PGR004G1693' => 'pgr', 'PGR004G2822' => 'pgr', 'PGR031G1202' => 'pgr', 'PGR031G1903' => 'pgr', 'PGR044G2563' => 'pgr', 'PGR102G0144' => 'pgr', 'PGR102G0635' => 'pgr', 'PGR102G1666' => 'pgr', 'PGR102G2469' => 'pgr', 'PGR102G2836' => 'pgr', 'PGR119G2024' => 'pgr', 'PGR142G4359' => 'pgr', 'PGSC0003DMG400000638' => 'stu', 'PGSC0003DMG400018579' => 'stu', 'PGSC0003DMG400028593' => 'stu', 'PGSC0003DMG400030120' => 'stu', 'PGSC0003DMG400032101' => 'stu', 'PGSC0003DMG400043646' => 'stu', 'PGSC0003DMG401020117' => 'stu', 'Phvul.003G099000' => 'pvu', 'Phvul.005G125700' => 'pvu', 'Phvul.005G166200' => 'pvu', 'Phvul.005G178200' => 'pvu', 'Phvul.006G159300' => 'pvu', 'Phvul.007G167900' => 'pvu', 'Phvul.007G183200' => 'pvu', 'Phvul.009G111800' => 'pvu', 'Phvul.010G145400' => 'pvu', 'Phvul.010G156101' => 'pvu', 'Potri.001G189900' => 'ptr', 'Potri.001G191900' => 'ptr', 'Potri.001G464900' => 'ptr', 'Potri.003G032400' => 'ptr', 'Potri.004G185900' => 'ptr', 'Potri.005G040400' => 'ptr', 'Potri.006G098200' => 'ptr', 'Potri.006G236300' => 'ptr', 'Potri.008G197600' => 'ptr', 'Potri.009G146300' => 'ptr', 'Potri.010G027100' => 'ptr', 'Potri.010G236300' => 'ptr', 'Potri.013G028300' => 'ptr', 'Potri.014G136200' => 'ptr', 'Potri.016G113500' => 'ptr', 'Potri.018G046800' => 'ptr', 'Pp3c17_11700' => 'ppa', 'Pp3c23_13840' => 'ppa', 'Pp3c2_13560' => 'ppa', 'PRCOL_00006981' => 'pco', 'Prupe.1G145400' => 'ppe', 'Prupe.1G178800' => 'ppe', 'Prupe.1G445100' => 'ppe', 'Prupe.3G059200' => 'ppe', 'Prupe.3G087100' => 'ppe', 'Prupe.6G123100' => 'ppe', 'Prupe.6G123200' => 'ppe', 'Prupe.6G123300' => 'ppe', 'Prupe.6G123400' => 'ppe', 'Prupe.6G123600' => 'ppe', 'Prupe.6G123700' => 'ppe', 'Prupe.6G124800' => 'ppe', 'Prupe.6G332500' => 'ppe', 'Prupe.7G220400' => 'ppe', 'Prupe.8G249400' => 'ppe', 'Psat0s4897g0080' => 'psa', 'Psat1g186240' => 'psa', 'Psat4g220680' => 'psa', 'Psat5g295840' => 'psa', 'Psat5g296160' => 'psa', 'Psat5g302360' => 'psa', 'Psat6g148480' => 'psa', 'Psat6g169520' => 'psa', 'Psat7g257040' => 'psa', 'PSO063G1926' => 'pso', 'PSO063G2306' => 'pso', 'PSO210G0449' => 'pso', 'PSO210G0742' => 'pso', 'PSO210G2202' => 'pso', 'PSO210G5063' => 'pso', 'PSO210G5583' => 'pso', 'PSO339G1443' => 'pso', 'PSO384G0732' => 'pso', 'PSO675G0970' => 'pso', 'PSO832G1046' => 'pso', 'PSO832G2637' => 'pso', 'PSO832G2680' => 'pso', 'PSO832G2860' => 'pso', 'QL01p013198' => 'qlo', 'QL01p013207' => 'qlo', 'QL01p013283' => 'qlo', 'QL03p003625' => 'qlo', 'QL03p066898' => 'qlo', 'QL03p066929' => 'qlo', 'QL04p049816' => 'qlo', 'QL04p049852' => 'qlo', 'QL05p020091' => 'qlo', 'QL05p020124' => 'qlo', 'QL05p029917' => 'qlo', 'QL06p006489' => 'qlo', 'QL10p017822' => 'qlo', 'QL12p023127' => 'qlo', 'QL12p041013' => 'qlo', 'RcHm_v2.0_Chr2g0091811' => 'rch', 'RcHm_v2.0_Chr2g0105441' => 'rch', 'RcHm_v2.0_Chr2g0135431' => 'rch', 'RcHm_v2.0_Chr2g0140511' => 'rch', 'RcHm_v2.0_Chr3g0453481' => 'rch', 'RcHm_v2.0_Chr4g0420371' => 'rch', 'RcHm_v2.0_Chr5g0061201' => 'rch', 'RcHm_v2.0_Chr5g0072591' => 'rch', 'RcHm_v2.0_Chr6g0292191' => 'rch', 'RcHm_v2.0_Chr6g0306621' => 'rch', 'Rhsim01G0278500' => 'rsi', 'Rhsim02G0175200' => 'rsi', 'Rhsim04G0213900' => 'rsi', 'Rhsim07G0178400' => 'rsi', 'Rhsim08G0227400' => 'rsi', 'Rhsim12G0191300' => 'rsi', 'Rhsim13G0020600' => 'rsi', 'Sabra01G0149900' => 'sbr', 'Sabra04G0125200' => 'sbr', 'Sabra05G0039400' => 'sbr', 'Sabra06G0075500' => 'sbr', 'Sabra08G0162700' => 'sbr', 'Sabra09G0112800' => 'sbr', 'Sabra10G0183400' => 'sbr', 'Sabra13G0028800' => 'sbr', 'Sabra14G0102700' => 'sbr', 'Sabra15G0058000' => 'sbr', 'Sabra15G0069600' => 'sbr', 'Sabra15G0071700' => 'sbr', 'Sabra16G0108900' => 'sbr', 'Sabra16G0263100' => 'sbr', 'Sabra16G0314100' => 'sbr', 'Sabra16G0315500' => 'sbr', 'Sabra16G0315600' => 'sbr', 'Sabra16G0315700' => 'sbr', 'Sabra18G0045400' => 'sbr', 'SalBow2G2709' => 'sbo', 'SalBow2G3566' => 'sbo', 'SalBow4G2633' => 'sbo', 'SalBow4G2889' => 'sbo', 'SalBow5G1431' => 'sbo', 'SalBow5G4503' => 'sbo', 'SalBow5G4889' => 'sbo', 'SalBow6G4026' => 'sbo', 'Sc12g0009760' => 'sci', 'Sc13g0003760' => 'sci', 'Sc15g0001900' => 'sci', 'Sc16g0008270' => 'sci', 'Sc18g0001470' => 'sci', 'Sc25g0001450' => 'sci', 'Sed0002879' => 'sed', 'Sed0008552' => 'sed', 'Sed0011855' => 'sed', 'Sed0014472' => 'sed', 'Sed0015069' => 'sed', 'Sed0018850' => 'sed', 'Sed0021133' => 'sed', 'Sed0022099' => 'sed', 'Sed0027294' => 'sed', 'Sed0027380' => 'sed', 'Sed0027542' => 'sed', 'SEGI_16835' => 'sgi', 'SEGI_29601' => 'sgi', 'SEGI_30548' => 'sgi', 'SGA_v2.0_scaffold172G39043' => 'sas', 'SGA_v2.0_scaffold5G02695' => 'sas', 'SGA_v2.0_scaffold66G22530' => 'sas', 'SGA_v2.0_scaffold69G23320' => 'sas', 'SMO347G0088' => 'smo', 'SMO351G0336' => 'smo', 'Solyc01g080540.3' => 'sly', 'Solyc01g098400.3' => 'sly', 'Solyc03g116720.3' => 'sly', 'Solyc06g084410.4' => 'sly', 'Solyc08g066350.2' => 'sly', 'Solyc11g070150.2' => 'sly', 'Sopen01g032360' => 'spe', 'Sopen01g041970' => 'spe', 'Sopen03g035630' => 'spe', 'Sopen06g035800' => 'spe', 'Sopen08g020170' => 'spe', 'Sopen11g028820' => 'spe', 'Sp1g02400' => 'spa', 'Sp2g17940' => 'spa', 'Sp3g14740' => 'spa', 'Sp3g19550' => 'spa', 'Sp5g35700' => 'spa', 'Sp6g24670' => 'spa', 'Sp7g02660' => 'spa', 'TAR362G1287' => 'tar', 'TAR365G0048' => 'tar', 'TAR383G0320' => 'tar', 'TAR383G0489' => 'tar', 'TAR623G0761' => 'tar', 'TAR624G0712' => 'tar', 'TAR625G0831' => 'tar', 'TAR626G1761' => 'tar', 'TAR627G1138' => 'tar', 'TAR629G1546' => 'tar', 'TAR633G0981' => 'tar', 'TAR636G3222' => 'tar', 'THA.LOC104801207' => 'tha', 'THA.LOC104805504' => 'tha', 'THA.LOC104805933' => 'tha', 'THA.LOC104810909' => 'tha', 'THA.LOC104812508' => 'tha', 'THA.LOC104817959' => 'tha', 'THA.LOC104820231' => 'tha', 'THA.LOC104824217' => 'tha', 'Thecc.01G287000' => 'tca', 'Thecc.04G025600' => 'tca', 'Thecc.04G085200' => 'tca', 'Thecc.04G273700' => 'tca', 'Thecc.05G085200' => 'tca', 'Thecc.05G298100' => 'tca', 'Thecc.06G024000' => 'tca', 'Thecc.06G099900' => 'tca', 'Thecc.09G047700' => 'tca', 'Thecc.09G101300' => 'tca', 'Thecc.09G101500' => 'tca', 'Thecc.09G288300' => 'tca', 'Thhalv10005064m.g' => 'esa', 'Thhalv10009010m.g' => 'esa', 'Thhalv10015244m.g' => 'esa', 'Thhalv10015568m.g' => 'esa', 'Thhalv10019654m.g' => 'esa', 'Thhalv10021689m.g' => 'esa', 'Thhalv10021714m.g' => 'esa', 'Thhalv10027974m.g' => 'esa', 'TPR.G16954' => 'tpr', 'TPR.G18038' => 'tpr', 'TPR.G26915' => 'tpr', 'TPR.G37141' => 'tpr', 'TPR.G38656' => 'tpr', 'TPR.G6590' => 'tpr', 'TWI09G0272' => 'twi', 'TWI12G0025' => 'twi', 'TWI12G0066' => 'twi', 'TWI12G0413' => 'twi', 'TWI14G0158' => 'twi', 'TWI34G0670' => 'twi', 'TWI34G1910' => 'twi', 'TWI63G1441' => 'twi', 'TWI63G1532' => 'twi', 'TWI73G0342' => 'twi', 'TWI75G1191' => 'twi', 'TWI75G1846' => 'twi', 'unitig_0.g2569' => 'ugi', 'unitig_22.g6691' => 'ugi', 'unitig_748.g8568' => 'ugi', 'unitig_88.g27686' => 'ugi', 'vmacro02533' => 'vma', 'vmacro05044' => 'vma', 'vmacro11046' => 'vma', 'vmacro14951' => 'vma', 'vmacro16898' => 'vma', 'vmacro18854' => 'vma', 'VMungo0331G0025' => 'vmu', 'VMungo0331G1806' => 'vmu', 'VMungo0540G0452' => 'vmu', 'VMungo0540G1727' => 'vmu', 'VMungo0720G0007' => 'vmu', 'VMungo0720G0349' => 'vmu', 'VMungo1080G0477' => 'vmu', 'VMungo1080G1060' => 'vmu', 'VMungo1080G1526' => 'vmu', 'VMungo1127G1930' => 'vmu', 'VMungo1215G2029' => 'vmu', 'VMungo1309G1800' => 'vmu', 'Zm00001eb039590' => 'zma', 'Zm00001eb096040' => 'zma', 'Zm00001eb153570' => 'zma', 'Zm00001eb176120' => 'zma', 'Zm00001eb283590' => 'zma', 'Zm00001eb353520' => 'zma' ) $gf_id = 'HOM05D000581' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000581' ) $data_identifier = 'HOM05D000581' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 11, 'cil' => (int) 16, 'cla' => (int) 8, 'col' => (int) 12, 'cpa' => (int) 10, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 19, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 11, 'fan' => (int) 30, 'fve' => (int) 9, 'gma' => (int) 23, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 17, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 9, 'lal' => (int) 16, 'lja' => (int) 11, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 12, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 16, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 12, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353520' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1